PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00812
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 334aa    MW: 38312.6 Da    PI: 6.0821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00812genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-14130176354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  AA53G00812 130 KSHSEAERRRRERINTHLSKLRSILPNT-----TKTDKASLLAEVIQHMKEL 176
                 79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.945127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11130176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.86E-4130179No hitNo description
Gene3DG3DSA:4.10.280.108.1E-15131186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-14131186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0016036Biological Processcellular response to phosphate starvation
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MYAMKEEDCL QAFHNLQDYQ KDQFLLHHHP QILPWSTLPS FDPTRYPYPD PVHPPPPPYF  60
NSRRSSSSSS PSNYYDTLAS PPSMDHNHNH LRILSEALGP IMRRGFDGHD LMAKMSAQEV  120
MDAKALAASK SHSEAERRRR ERINTHLSKL RSILPNTTKT DKASLLAEVI QHMKELKRQT  180
SQISDTCPIP TESDELTVDS TAYNDEEGNL VIRASFCCQD RNDLMHDVIK ALKTLRLRTL  240
KAEIATVGGR VKNVLFLSRE DEDEEEYHRT FDNDDDDDDN EHKRYDHVSS IEEALKAVIE  300
KCVNNGENDN NNLEQSSSGS IKRQRTSKMV NQCY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697361.11e-167PREDICTED: transcription factor AIG1-like
SwissprotQ9LS081e-164BH032_ARATH; Transcription factor AIG1
TrEMBLA0A087GYW41e-165A0A087GYW4_ARAAL; Transcription factor bhlh30
STRINGBra026510.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139491725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.11e-132basic helix-loop-helix 32